Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs11626672 | chr14:91785657 | A/G | 3.62E-6 | 65 | 65.47 | 73.7 | 26.33 | KM Plot |
| KICH | rs11627726 | chr14:91786084 | C/T | 3.62E-6 | 65 | 65.47 | 73.7 | 26.33 | KM Plot |
| KICH | rs11628976 | chr14:91787189 | A/G | 3.62E-6 | 65 | 65.47 | 73.7 | 26.33 | KM Plot |
| KICH | rs11629048 | chr14:91787421 | A/G | 3.62E-6 | 65 | 65.47 | 73.7 | 26.33 | KM Plot |
| KICH | rs116385760 | chr14:91789582 | C/T | 4.65E-6 | 64 | 66.1 | 73.7 | 26.33 | KM Plot |
| KICH | rs118122268 | chr10:102989927 | G/A | 1.0E-6 | 62 | 63.23 | 53.87 | 16.9 | KM Plot |
| KICH | rs11814752 | chr10:61954250 | G/A | 7.62E-7 | 63 | 64.83 | 66.1 | 16.9 | KM Plot |
| KICH | rs11822168 | chr11:105630803 | G/A | 0.00013 | 65 | 68.8 | 63.23 | 25.13 | KM Plot |
| KICH | rs11841965 | chr13:51116489 | T/A | 4.6E-7 | 63 | 63.23 | 75.97 | 16.9 | KM Plot |
| KICH | rs11894281 | chr2:63928919 | A/G | 4.28E-7 | 64 | 66.78 | 30.67 | 16.9 | KM Plot |
| KICH | rs12122154 | chr1:85775865 | C/T | 1.18E-6 | 63 | 64.67 | 91.73 | 20.75 | KM Plot |
| KICH | rs12123722 | chr1:85873950 | T/C | 1.25E-6 | 63 | 67.47 | 75.73 | 20.75 | KM Plot |
| KICH | rs12126355 | chr1:85891874 | C/T | 6.7E-7 | 65 | 20.75 | 91.73 | 65.47 | KM Plot |
| KICH | rs12131258 | chr1:85901913 | T/A | 1.2E-6 | 62 | 68.8 | 51.77 | 20.75 | KM Plot |
| KICH | rs12269543 | chr10:61949120 | G/C | 7.62E-7 | 63 | 64.83 | 66.1 | 16.9 | KM Plot |